rs37110686 SNP Detail

Summary

• ID
  rs37110686
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108636145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACT GGGTAAAGGG CTCAGTGAAC
  K
  TGTGCTGCAT AAATGTGGAG ATTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51810833	NES14774648	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	T		G	T	G		G
ss133506673	ENSMUSSNP4177988	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321893490	CHEV_6_108609178	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs37110686					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51810833	NES14774648	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108636145 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
4833447P13Rik	RIKEN cDNA 4833447P13 gene	within coordinates
Bhlhe40	basic helix-loop-helix family, member e40	1445 bp upstream
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	within coordinates
Rr636153	regulatory region 636153	674 bp distal
Rr636154	regulatory region 636154	173 bp distal
Rr636155	regulatory region 636155	253 bp proximal
Rr636156	regulatory region 636156	955 bp proximal
Rr636157	regulatory region 636157	1540 bp proximal
Rr636158	regulatory region 636158	1725 bp proximal
Tssr58067	transcription start site region 58067	563 bp downstream
Tssr58068	transcription start site region 58068	514 bp downstream
Tssr58069	transcription start site region 58069	414 bp downstream
Tssr58070	transcription start site region 58070	371 bp downstream
Tssr58071	transcription start site region 58071	480 bp upstream
Tssr58072	transcription start site region 58072	1250 bp upstream
Tssr58073	transcription start site region 58073	1296 bp upstream
Tssr58074	transcription start site region 58074	1335 bp upstream
Tssr58075	transcription start site region 58075	1432 bp upstream
Tssr58076	transcription start site region 58076	1588 bp upstream
Tssr58077	transcription start site region 58077	1671 bp upstream
Tssr62390	transcription start site region 62390	219 bp downstream
Tssr62391	transcription start site region 62391	618 bp downstream