rs3711142 SNP Detail

Summary

• ID
  rs3711142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123130266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGCTTT CCTAGCCCTA
  GGTAGCCTGG AACTTGCCAT GTAAACCAGG CTTGGTCTAG AACTTTGCGT GAGCCTCCTG
  CCTCTGTCTC CTGAATCTTG GGACTATCCC ATACCCCAGT TTCATGCTCC AGGCTCTTAA
  GAGCTTACAG GGGCTTTGAA CAAAGTCCTT CCTATTGCCA TCTCTTTAAA TCTTTGCTAT
  Y
  TCATAGCTAA GGTTCAGAGA AATGCTAAGC TATTTGACCA CAACAAAATT ATGACTACAT
  GATTTGAACC AAGAACTTGG GAGAAATCTG GAGCCCACAA GTCTGGCCGC TCTGTAAGCC
  TGCCTGTGAG ACATTTAGAA TCCAGCTACT CATGAGTACC AAGAACTCAC TCTACTATTG
  AAATACACTT AGAGCAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss5087389	WI_WGS_5_121082190	WI	MOUSE	f	SNP	T			C
ss45797864	mCV24884186	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss149192269	ENSMUSSNP2312722	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321670149	CHEV_5_123442212	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3711142					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123130266 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	728 bp downstream
Rr378570	regulatory region 378570	1870 bp upstream
Rr620036	regulatory region 620036	1387 bp distal
Rr620037	regulatory region 620037	282 bp distal
Tssr48738	transcription start site region 48738	1434 bp downstream
Tssr48739	transcription start site region 48739	1423 bp downstream
Tssr48740	transcription start site region 48740	1378 bp downstream
Tssr48741	transcription start site region 48741	1339 bp downstream
Tssr53175	transcription start site region 53175	1913 bp upstream
Tssr53176	transcription start site region 53176	1796 bp upstream
Tssr53177	transcription start site region 53177	1740 bp upstream
Tssr53178	transcription start site region 53178	1708 bp upstream
Tssr53179	transcription start site region 53179	1674 bp upstream
Tssr53180	transcription start site region 53180	1630 bp upstream