rs3711145 SNP Detail

Summary

• ID
  rs3711145
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48822089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTTGTCA AGACAGCATC
  TGCCACATGG AAAGAAGTCC ATAAATATTG TCACTGTCAT TACAGGGGTC TCACAATGTG
  TCTACTCCAC ACATTCACAG CAGTTGATAC TCTGGTTGTA GTCCAGAGAA GCAGACACGG
  GGTAGCCAGT TCAAGATGAA AATCTAGAAA CTACAGGCCA ACTTACTGAT TTCAGAAAGG
  W
  CCCATTCTTC AGGAAACTCA GCAGCCTCAC AGGCTGAGTC AAAGCAGTGA TTCAGGGGAG
  GCCTTACTCC CGTATTGGAG GCTACTTGGG ATCTAGCCCA CAGCAGGAGT GCAATTAGGA
  TCATAGTGGA TGGTGTCACT CAGCCCTAGC ATCTTTCTCA AGTCACCAGG ACTCCTCATC
  CAGTTGGTTT GGGACATGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss5087392	WI_WGS_4_47683376	WI	MOUSE	f	SNP	A					T
ss37984096	NES09430687	PERLEGEN	MM_PANEL2	f	SNP	A			T	T		T		T	T	A	T
ss146280801	ENSMUSSNP6391836	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs3711145					SNP	A	A	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37984096	NES09430687	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48822089 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	within coordinates