rs37112214 SNP Detail

Summary

• ID
  rs37112214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113420381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  GTGTATTTGT GCACGTGAGA GCAACTGCTC GCAGAATCCA GTAGAGGGCG TTGGAGCTGG
  AGTTACACAT GGCATTTGGA GTCTACCCGA GGTTGGTGCT GAGAGCCAAG CCCAGAAAGG
  TGGCAAGCCA TGTCTCTAAC CACACGTCAG AAGTGATTTT GGAAGCTAGA GTTGTGGTTC
  R
  TGAACCCAAA CCGCCTCCAC TGCAGCGAGC CTACTCTCCA GCTCCAACTC GGGTTATTTC
  CAATTGGAGT CTCAGTTTTC ACATTTTTAG AGGGAGAAAA TTTCATGATT TTTAGGTTTT
  GGTGAGGAAT TAGCAAGTCG TTTGTGTAAA GGCACAGCAT AGGAGTGTGG TGGCTGCTAA
  ACTTGGGGCT GTCTGGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51841477	NES14768151	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		A	A	A		G
ss321910888	CHEV_6_113393414	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37112214					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841477	NES14768151	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113420381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	312 bp distal
Jagn1	jagunal homolog 1	within coordinates
Rr132170	regulatory region 132170	1781 bp distal
Rr145547	regulatory region 145547	within coordinates
Rr399832	regulatory region 399832	775 bp downstream
Tssr58212	transcription start site region 58212	793 bp downstream
Tssr58213	transcription start site region 58213	785 bp downstream