rs37113182 SNP Detail

Summary

• ID
  rs37113182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19279073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGGTTTC TCATTGTCAA
  TTATTAAAAC ACTTTAGTTA GTGGCTGCAT TGATTCGCCA TTTTCAAAAC AGATTTTTAA
  TGTATCTATT TATATTTCTC GTTTTGAACC ACTATATTCC CTTTAAATGC ACGGTTAGTC
  TGTGGATTCT GTGACCCAGA GGTGTTTATG TAACTAATGT GACTATCTGC GTGTAAATTC
  R
  TGTTTATGAT TTTTTATAAT ATATATGTGT GCATGTGCGT GTGTGTGTGT GTGCGCGCGC
  GCGCGCGCAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT ATGCGTGCGC
  GTTGTATCTA AGTCCTGTGT GCAATAATGT TTTTCTGTCT GCTGAGGCTT ACTTCTCCAG
  CCTATTGTTT GAGACAACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916970	NES13479837	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37113182					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916970	NES13479837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19279073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	832 bp proximal
Rr408237	regulatory region 408237	959 bp distal
Rr408238	regulatory region 408238	within coordinates
Rr408239	regulatory region 408239	122 bp proximal
Tfap2b	transcription factor AP-2 beta	65 bp upstream
Tssr6030	transcription start site region 6030	91 bp upstream
Tssr6031	transcription start site region 6031	134 bp upstream
Tssr6032	transcription start site region 6032	149 bp upstream
Tssr6033	transcription start site region 6033	165 bp upstream
Tssr6034	transcription start site region 6034	189 bp upstream
Tssr6035	transcription start site region 6035	221 bp upstream
Tssr6036	transcription start site region 6036	245 bp upstream
Tssr6037	transcription start site region 6037	263 bp upstream
Tssr6038	transcription start site region 6038	291 bp upstream
Tssr6039	transcription start site region 6039	306 bp upstream