rs37113871 SNP Detail

Summary

• ID
  rs37113871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35514763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTGTTT TTGGAAGAGG
  TGATATTTAG GTTAAGAGGA CAAACATGAA TTCATGAGCT TGGAGGCTAA CTGGTGAAGC
  TTACTTGGTC AAATGTAAGC GTACATGGAC AAAGCTACTT AAAGAAATAC AAGTGAGGGT
  CTGGAGTACA GCTTTCAGAT AGGGAAGAAA AAGAATTGTT CAACACAACA CAATGTCCCA
  R
  TAGACCAAAA GATAGAGTTG GAAGTGATAT AGAGTCAAAA GCATCTATCA TCAAGTTAGA
  GAAGGAAGTT CACTGAGAAA AAAAATATGC TTAAAATAAA CACTGATCCC TTCAGCTAAC
  TATTGAAGAT GACCAGGATG GGGGTGGGCA AACCAAATCA AGAAAATACA GGGGGTGGGG
  TGGGGTGGGG TGGGGAATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51601191	NES14847541	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37113871					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51601191	NES14847541	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35514763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17298	CpG island 17298	1298 bp proximal
Mtpn	myotrophin	within coordinates
Rr146138	regulatory region 146138	437 bp proximal
Rr399612	regulatory region 399612	1929 bp upstream
Tssr60312	transcription start site region 60312	413 bp downstream
Tssr60313	transcription start site region 60313	1879 bp downstream
Tssr60314	transcription start site region 60314	1919 bp downstream
Tssr60315	transcription start site region 60315	1937 bp downstream