rs37115638 SNP Detail

Summary

• ID
  rs37115638
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19280168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATCCAGT ACCGTATGGG
  AGAGAGCGCG GTTTGTTATT TTTGTTTTGT CGTATTTTGA TTCTTTGCGG GTCAGTGGTT
  CCAAGCAGAG ATGGCAGCCG CCAGCGTGTG GGCATTTTTA ACGAAGCCTG CCCACACTTC
  GTGCTACCCG CTACCGGTCC CCAGGCAAGC GCATCCCTCC CGTGCTTTTC CCTCCGCCTT
  S
  TCGGACGCCA CCGAGAGCTT CCGGAGTCCG CGTCGAGCGA GGCTGTCCGG CTGCCCTTCC
  AGCTGGCGGG CGAGGGGAAG CGGCCCGGCT GGGGACAGAT GAGGGATCCC GCGCCACAAC
  CCGGGAGCTG GGGAGCTGAG CTCAAGAGGA AAGGAAAGTA AGGCTCAAGG GGACGTCGAG
  AGAGGGAAGG CAGACTCCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916956	NES13479770	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37115638					SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916956	NES13479770	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19280168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	within coordinates
Rr408238	regulatory region 408238	974 bp distal
Rr408239	regulatory region 408239	within coordinates
Rr408240	regulatory region 408240	1620 bp proximal
Tfap2b	transcription factor AP-2 beta	within coordinates
Tssr6030	transcription start site region 6030	977 bp downstream
Tssr6031	transcription start site region 6031	950 bp downstream
Tssr6032	transcription start site region 6032	933 bp downstream
Tssr6033	transcription start site region 6033	911 bp downstream
Tssr6034	transcription start site region 6034	891 bp downstream
Tssr6035	transcription start site region 6035	855 bp downstream
Tssr6036	transcription start site region 6036	843 bp downstream
Tssr6037	transcription start site region 6037	818 bp downstream
Tssr6038	transcription start site region 6038	791 bp downstream
Tssr6039	transcription start site region 6039	767 bp downstream