rs3711599 SNP Detail

Summary

• ID
  rs3711599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138891869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTG GTTCCCTTTA GGGTGATTTT
  Y
  CAGGGTGGCC AGGGTTGCTT TCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5087846	WI_WGS_1_139836946	WI	MOUSE	f	SNP	C	T
ss320001743	CHEV_1_140860708	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3711599					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138891869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi831	CpG island 831	within coordinates
Dennd1b	DENN domain containing 1B	within coordinates
Gm37045	predicted gene, 37045	1228 bp upstream
Rr28649	regulatory region 28649	within coordinates
Rr28650	regulatory region 28650	731 bp proximal
Rr396345	regulatory region 396345	190 bp upstream
Tssr9165	transcription start site region 9165	659 bp downstream
Tssr9166	transcription start site region 9166	447 bp downstream
Tssr9167	transcription start site region 9167	323 bp downstream