rs37116828 SNP Detail

Summary

• ID
  rs37116828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:93203786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCCGGA GTGCAAGTTC
  ACGCCACCAG CACCCGGAAG ACAGCCAGGA GGACCTCTGC ATCGCACAGG CCAACCGCTC
  AATCATGTGG TTCAGGTAGA TCCTTAAGAA CCACAGTGGG GACTGACAGA GTAAGGCATT
  CAAAGTGAAG TGCTGCTTCC AGCACACACA GACTTAGTAA CAACAGTAAT AGAGAGGCAC
  Y
  ATACACGCGC AACAGGCTCG CTAGATCTTC TCAGCTGAAA TTTAAGGGTT AATCTTCACA
  AAATGAGATA AGCACCGTTC ACTAGGATTT ATTCAATGTA TCCCTCCTTA GCTTTTAACT
  TTAATTTTAA TTTTTTTCCC TTGAATATTT TACATCTTCT AACTTGTTTA ACCACCCATA
  AAATACACCC CTCTACTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51751767	NES14555278	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37116828					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51751767	NES14555278	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:93203786 () rs orientation: forward

Symbol	Name	Function Class
Gm52193	predicted gene, 52193	910 bp downstream
Yaf2	YY1 associated factor 2	within coordinates