rs3711744 SNP Detail

Summary

• ID
  rs3711744
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123130375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACCCCAG TTTCATGCTC
  CAGGCTCTTA AGAGCTTACA GGGGCTTTGA ACAAAGTCCT TCCTATTGCC ATCTCTTTAA
  ATCTTTGCTA TCTCATAGCT AAGGTTCAGA GAAATGCTAA GCTATTTGAC CACAACAAAA
  TTATGACTAC ATGATTTGAA CCAAGAACTT GGGAGAAATC TGGAGCCCAC AAGTCTGGCC
  K
  CTCTGTAAGC CTGCCTGTGA GACATTTAGA ATCCAGCTAC TCATGAGTAC CAAGAACTCA
  CTCTACTATT GAAATACACT TAGAGCAAAA TAAATAAATA CATAAATAAA ATCAAAGATA
  AACTGGGCAT GGTAGTACAT GCCTGGGCAA TATAATGAAA CCATGTCTCA AAAGTAAAAA
  ATTAATGGGC TAGTGTTATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5087991	WI_WGS_5_121082299	WI	MOUSE	f	SNP	T						G
ss51195099	NES13813296	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	G	G		T	G	G	G		G	G	T	G		T
ss149192273	ENSMUSSNP1552792	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321670150	CHEV_5_123442321	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3711744					SNP	T	T	G	T	G	G	G	T	G	G	G	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195099	NES13813296	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123130375 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	837 bp downstream
Rr378570	regulatory region 378570	1761 bp upstream
Rr620036	regulatory region 620036	1496 bp distal
Rr620037	regulatory region 620037	391 bp distal
Rr620038	regulatory region 620038	1977 bp proximal
Tssr48738	transcription start site region 48738	1543 bp downstream
Tssr48739	transcription start site region 48739	1532 bp downstream
Tssr48740	transcription start site region 48740	1487 bp downstream
Tssr48741	transcription start site region 48741	1448 bp downstream
Tssr53176	transcription start site region 53176	1905 bp upstream
Tssr53177	transcription start site region 53177	1849 bp upstream
Tssr53178	transcription start site region 53178	1817 bp upstream
Tssr53179	transcription start site region 53179	1783 bp upstream
Tssr53180	transcription start site region 53180	1739 bp upstream