rs37120158 SNP Detail

Summary

• ID
  rs37120158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117233470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTCTCAC TTAACCTACA
  ACTCTGATCC TGCTAGACTG CTGGCAGGTG AGCCCCAGGG AGCCTCGGCC GCAGCTTCCC
  CATCACCACA ATGATGGTGC ATGTGCCACC ATGCCCGGCC TTTTACTCGG TGCTGGGGAT
  GCAAACCCAG GTCCTCACGC TCACACTTCC TGACCGCACA TCTTCCCGGC TTCAATAAGC
  R
  CGTGTCTTTA CGCAGAAAGG TAGAGAAAGC TCCCTTCTGA GCAGGGCATT GGACACAATA
  CAGACAGGGA ACACAGAACC ACAAGGGAGG GCCAAAGGAG GGAAAAGTCC CACAGAGCGG
  GAAAAATCAA CTCAATTCTA CGTACTATCA AAAATCCTAA TGTTATCATA ATAAAATTAA
  CTTCATTTTC CAAAACCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51186320	NES13827045	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37120158					SNP	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51186320	NES13827045	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117233470 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	644 bp distal
Rr618555	regulatory region 618555	781 bp distal
Rr618556	regulatory region 618556	992 bp proximal
Rr618557	regulatory region 618557	1357 bp proximal
Rr618558	regulatory region 618558	1462 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron