rs37120362 SNP Detail

Summary

• ID
  rs37120362
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5652833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGTGGTGG GGGGCATTCC CCACTTTTCT CTTAGACGAG
  GCTATCACCC TGAGCAGCTG GGTCCCCACC CAACTGCTGT GTATTATAAG TCACAAAGTA
  K
  AAGTGACTCC TGTTGCAGAT TCACGCCCAG GTCCCTGAGG ACTGAGAACC AGATCATGAG
  AATGACAGTC ACAGATCCCT TCTCACCACT TGGAGCGACT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss50578376	NES13651105	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs37120362					SNP	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578376	NES13651105	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5652833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	191 bp distal
Kat5	K(lysine) acetyltransferase 5	209 bp downstream
Rnaseh2c	ribonuclease H2, subunit C	within coordinates
Rr363585	regulatory region 363585	within coordinates
Rr370434	regulatory region 370434	846 bp downstream
Tssr154457	transcription start site region 154457	953 bp downstream
Tssr154458	transcription start site region 154458	889 bp downstream