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rs37120902 SNP Detail
Summary
  • ID
    rs37120902
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr19:8928733 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAAGGCCTC TGGCTTCAGG
    GATTCGTTCA AGCTCACAGC CAGCAGCCAA GCGTCAGAAA CTAAACCCTG CTGATGCTCC
    CAATCCAGTG GTATTTGTGG CCACAAAGGA CACCAGGTAG GGAGGGAGTC CACCATGAGG
    GGCTGAGAGG CTGGCAATCC AAGTTGTCCA GCATTGGAAG TAGGCGTATC TGAGAAAGAT
    M
    GGTGCACAAG AGAATGTGGG TACCAGAGGG TAGAACTGTA GAGGGCGTTG TGGAGCTGAA
    CCTGGTTGAG TCTTGATGCT CATCAAGCTT TCCTGTTTCT GTCTTGCTCT TTTTGGCCAG
    GGCTTTAAGG AAAGCTCTAA CTCACCTGGA AATGCGCCGA GCGGCCCGAA GGCCCAACCT
    ACCCCTGAAG GTGAAACCAA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss50609154 NES13644106 PERLEGEN MM_PANEL2 f SNP A A A A A A C A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs37120902 SNP A A A A A A C A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss50609154 NES13644106 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:8928733 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm59132 predicted gene, 59132 within coordinates
Mta2 metastasis-associated gene family, member 2 within coordinates
Rr359578 regulatory region 359578 within coordinates
Rr363780 regulatory region 363780 1067 bp proximal
Tssr154900 transcription start site region 154900 701 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory