rs37121063 SNP Detail

Summary

• ID
  rs37121063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25190412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACCTGAA GGTTCTCCTT
  CCCCAGGCTC ACTCCTGGGG AACACTTGTG TCACAGCGTT CCCAAGCAAT TCAGTACTTC
  AGATGCTGTC GCTAGGAGCT CTCACGCTGT CTGTTCTGCA AACGACAGCA GCCCTACCTT
  CCAAAAAACA CAACCCACAG AAGAAGTAAG ACTGAAAAGC TGAACAGGCC AGGTGGAGGG
  Y
  GCCCGTCAGC AAGACTAGAA CTCAGGAGAT GGATGTGAGG GTAGGGCTAG CCTGGGGTAC
  ATGAAGAGGC TGTCTGGAAC ATACAACCCG CCTTGGGTAA ACTGTGCTTT ACTATTGAAT
  GCTTTAGTTC AGAACAAAGG ACAGCTGAGG CCTCTACATG GGGAAGAGCC AGGCCACAGC
  AGTTCTGAGG ACACTCTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51082724	NES13879781	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37121063					SNP	T	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51082724	NES13879781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25190412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1500035N22Rik	RIKEN cDNA 1500035N22 gene			428 bp upstream
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608457	regulatory region 608457			1405 bp distal
Rr608458	regulatory region 608458			1797 bp distal
Rr608459	regulatory region 608459			1660 bp distal
Rr608460	regulatory region 608460			within coordinates
Rr608461	regulatory region 608461			456 bp proximal
Tssr45452	transcription start site region 45452			426 bp upstream