rs37121433 SNP Detail

Summary

• ID
  rs37121433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94004193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGGCAGGA TGGACGAAGT TGTCCTGGTG CCCTGCTCTG
  CCCTTCCCAC TGCACTTCCA TCACGCTTCC ACTCTCTGAC ACGCATGCAC AGGCAGTCTA
  Y
  TTCATTATCT ATTAGTAACA CCCGGCCACT AAATTTCTTC TCATTTCTGT AACACAGAGA
  AACCCTGTCT CGAAAAACAA ACAAACAAAC AAACAAACAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51369981	NES13734000	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37121433					SNP	T	T	T	T	T	C	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51369981	NES13734000	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94004193 () rs orientation: forward

Symbol	Name	Function Class
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	within coordinates
Rr151047	regulatory region 151047	1594 bp distal
Tssr62166	transcription start site region 62166	1624 bp downstream