rs37122103 SNP Detail

Summary

• ID
  rs37122103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60659106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTCTGTG GCAAGGTCGT
  CGGAAGAATG TGTTGCTGTA ACTCGGCTTT CCAGGATGGA ATTCTGCCCT GGAAGCTGGG
  GGTAGGAAGA GGCCTTTGTA CAAAACAACA AACAGCACCC TTACTTTCTG GATGATACAA
  AGAGCACTGA GCCTGTCTGG ACTTGGACTT GGACTTGCGC AGAGCACCCC AGGAGGGCCA
  Y
  AGCAGCCAAG GCTCCAGGAA ACGAGGAGTG TGGGACTGAA ACCTGAGGAG CGCACGCGCA
  CTTAGACCGC AACGTCCTGC TGGGTCGGTT TAGCTTACGT CAACGTCTAC GTAAAAGGCG
  TAGGGGACGC GGGGAGGGAA GCGCCGGGCT GTGTCACGTG ACGGGTGCGC CGGGCGTTGG
  CTCCTCCCTC ACCAAGATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50418808	NES13463003	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37122103					SNP	C	C	C	C	C	C	T	C	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418808	NES13463003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60659106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	within coordinates
Dctn4	dynactin 4	151 bp upstream
Gm58902	predicted gene, 58902	within coordinates
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	160 bp upstream
Tssr153448	transcription start site region 153448	48 bp upstream
Tssr153449	transcription start site region 153449	9 bp downstream
Tssr153450	transcription start site region 153450	52 bp downstream