rs37122556 SNP Detail

Summary

• ID
  rs37122556
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46653997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGATTGC TGTGAGTTTA
  GGGACTTAGA GTTTTACGCC AGCCTGGCCT GTATCCTTGT CTCAAAAGCC CAGTATATGT
  GTTCATTCAA AGCACATGTG TCAGCACAAA TAATAAGCAG GTCTCCATTT ACTCCAGACA
  AAAGAGAGTC AAGAGGTGCC TGCTAGGCAT GGCTCCACAG TTGTGGGCTT TTGACAACAC
  M
  AAGAGCTGAG TTAAATGTGA TTTTTAACAT CGACAGTTGT GGTAGTTTGT ATGTAACTGG
  CTCCATTAGG CCCATAAGGG AGTGGCATGA TTAGGAGGTG TGGCTTTCTT AGAGTGGGTG
  TGGCCTTGCT GATGGAGTCA CTGTGGAGGT TGGCTTTCAG GTGTTATATG CTCAGGCTAT
  ATCCAGTGTG GTATGCAGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51103931	NES14353325	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A		C		C	C	C		C
ss148973505	ENSMUSSNP7144461	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A
ss324333677	CHEV_13_46595890	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37122556					SNP	C	?	C	C	A	A	C	A	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103931	NES14353325	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46653997 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1382 bp upstream
Cpgi5539	CpG island 5539	1262 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	1156 bp proximal
Rr478916	regulatory region 478916	1338 bp proximal
Rr478917	regulatory region 478917	1439 bp proximal
Rr478918	regulatory region 478918	1884 bp proximal
Tssr119597	transcription start site region 119597	1338 bp upstream
Tssr119598	transcription start site region 119598	1377 bp upstream
Tssr119599	transcription start site region 119599	1516 bp upstream
Tssr119600	transcription start site region 119600	1528 bp upstream
Tssr119601	transcription start site region 119601	1592 bp upstream
Tssr119602	transcription start site region 119602	1620 bp upstream