rs3712289 SNP Detail

Summary

• ID
  rs3712289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34726913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATACTTT TGTCAGGCAA
  GTAGAATATT TCTCTTTAGA TGCTTTTGAT TTCCACCCTG AACAGAGTTT TTTGAGCAAA
  TTTTTCCCCT TTCTTAAAAG GCTTAAAAGG ATTATAGATA GGAGGAGGAG GAGGGGAGAG
  GAGGAGAAAA AGAGGAAGAC AGGGAAGAGG AGAAAGAAAT GGCTTGCAGT GTTTTGTTTA
  Y
  TTGATTGCTG TTAAGTCCTT AGGAATAGCT GAGACACTGA AGACATTGAG CTGGGTGAGG
  CACTTGACCT GTTTCTTGCA GATGCCGCTG GTCGATTGCT AACACCTCCA GCATCCCATC
  TTCATAGGCC TGTCAGTGAT GCAGCTTGGA TGCAATAGAA ACCCCCTGGT GCGCAACAGG
  TGCAAGCTAG GACAGTAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5088539	WI_WGS_8_33180250	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3712289					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34726913 () rs orientation: forward

Symbol	Name	Function Class
Gm63978	predicted gene, 63978	within coordinates
Gm63981	predicted gene, 63981	within coordinates
Tssr80908	transcription start site region 80908	769 bp downstream