rs3712409 SNP Detail

Summary

• ID
  rs3712409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48822298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAAACT CAGCAGCCTC
  ACAGGCTGAG TCAAAGCAGT GATTCAGGGG AGGCCTTACT CCCGTATTGG AGGCTACTTG
  GGATCTAGCC CACAGCAGGA GTGCAATTAG GATCATAGTG GATGGTGTCA CTCAGCCCTA
  GCATCTTTCT CAAGTCACCA GGACTCCTCA TCCAGTTGGT TTGGGACATG CCCGGGCATG
  Y
  AGTGCCCTTG CGAGTGTGAT TTTCCTGCTC CATGCTGCCC GCCCCTATGC TATCCTGCTC
  CTCATCTACT TGGCGAGTGT TTTGTTTCTT TTGCATTGTG ACAGTGAATT GGATTTCCCC
  ATTCCGGTTA CGATGCTGAT ACTACTAACT AGAATGTTGA TTTATGTGCC TCCCACTTGA
  GTATGAATAT TTTGCTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5088659	WI_WGS_4_47683585	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3712409					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48822298 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	within coordinates