rs37124333 SNP Detail

Summary

• ID
  rs37124333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15781597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGAGG GCAGAATCCA
  GGGCCTGGCA CATCCTAGGC AAGTTCCCTA CCACTGAGCT ACATCCCCAG CACCCAGCCA
  CTCAGCTTTA AATCCAAGGA CACCGTTAGA GAGGATATGA AGTAAAGTGC TGACTTCACC
  AGCCACCCTC ATGAAACCAG TGAGGCTCAA CCAGCCCAGC GACAACTTTG TCACAGTCCA
  R
  AGATGTTTTC ATCACATCTG GAAATATGCC ACTGACATCA AACTACAGAG GCTGGAGTTG
  TGAGGGCAGG TGCTTTTAAA TAGATCATAA TCCATAGACT AGAAGCCAAC ACAAGAAATT
  CCACTCCAAA GTGATGCTCA TGGAGAGGGT AAGAAACCCT GGTCTATGCA TCTATGCAAG
  ACAATTTCTC TGCTTGGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640780	NES13617925	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37124333					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640780	NES13617925	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15781597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10648	CpG island 10648	1980 bp distal
Gm50348	predicted gene, 50348	within coordinates
Gm54054	predicted gene, 54054	1722 bp upstream
Rr406864	regulatory region 406864	within coordinates
Rr544631	regulatory region 544631	1787 bp distal
Rr544633	regulatory region 544633	1165 bp distal
Rr544634	regulatory region 544634	349 bp distal