rs3712560 SNP Detail

Summary

• ID
  rs3712560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70119008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCATCAG GCACTGGATA
  GACAGAGAGG AGGCAATGGG AAGGTGAAAG TCGTCCCACC CCCATCTCTG CTGAGGACTC
  CGCAGGTGGA AACTTCAGTG GAGAGTAAAC AAGAAATACA CGTCCGGTCC AAAGAGGAAC
  GGCCATGGTT ATTACACTGA CCATATTACC AGGTTCTCTT GTAGACGCGC ATGCAGTCTA
  R
  AGCCTGTGCT GGACTGCTCA TTTTTATGTA TCCTGATGTC TCTGACAGGC CAAGCACGCT
  CATCTGTGGC TCATCTGCCC GGAGCCACTA TGAGCTCAGT ATGTGTCCGT GAACCACAAT
  ACTTCCTCCC TCTACTTGCT AGCCACAGGG TTTAAACAGC AGCTGCGTAC TCAGTAATGA
  TGTCAGTGTT CATTGCTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5088810	WI_WGS_9_70826238	WI	MOUSE	f	SNP	A			G
ss136604735	ENSMUSSNP6096407	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3712560					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70119008 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	within coordinates
Myo1e	myosin IE	within coordinates
Rr206678	regulatory region 206678	1807 bp distal
Tssr85881	transcription start site region 85881	1485 bp upstream
Tssr90403	transcription start site region 90403	within coordinates