rs3712687 SNP Detail

Summary

• ID
  rs3712687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG GCTGGAGACG GCAGCCTCTA
  Y
  GGGGCAGAGG CTCAGGGGCT GCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5088937	WI_WGS_11_55387088	WI	MOUSE	f	SNP	C		T
ss38692773	mCV22815683	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132140997	ENSMUSSNP4344313	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss323674144	CHEV_11_54722194	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3712687					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799518 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Rr447429	regulatory region 447429	1786 bp distal
Tssr3502	transcription start site region 3502	949 bp downstream
Tssr3503	transcription start site region 3503	1423 bp upstream
Tssr101553	transcription start site region 101553	1911 bp downstream
Tssr101554	transcription start site region 101554	1899 bp downstream
Tssr101555	transcription start site region 101555	1857 bp downstream
Tssr101556	transcription start site region 101556	1562 bp downstream
Tssr101557	transcription start site region 101557	1532 bp downstream
Tssr101558	transcription start site region 101558	1515 bp downstream
Tssr101559	transcription start site region 101559	1492 bp downstream
Tssr101560	transcription start site region 101560	1446 bp downstream
Tssr101561	transcription start site region 101561	135 bp downstream
Tssr101562	transcription start site region 101562	88 bp downstream
Tssr101563	transcription start site region 101563	76 bp downstream
Tssr101564	transcription start site region 101564	55 bp downstream
Tssr101565	transcription start site region 101565	360 bp upstream
Tssr101566	transcription start site region 101566	410 bp upstream
Tssr101567	transcription start site region 101567	771 bp upstream
Tssr101568	transcription start site region 101568	847 bp upstream
Tssr101569	transcription start site region 101569	930 bp upstream
Tssr101570	transcription start site region 101570	952 bp upstream
Tssr101571	transcription start site region 101571	1006 bp upstream
Tssr101572	transcription start site region 101572	1101 bp upstream
Tssr101573	transcription start site region 101573	1138 bp upstream
Tssr101574	transcription start site region 101574	1152 bp upstream
Tssr101575	transcription start site region 101575	1200 bp upstream
Tssr101576	transcription start site region 101576	1214 bp upstream
Tssr101577	transcription start site region 101577	1243 bp upstream
Tssr101578	transcription start site region 101578	1326 bp upstream
Tssr108006	transcription start site region 108006	1407 bp upstream
Tssr108007	transcription start site region 108007	118 bp upstream
Tssr108008	transcription start site region 108008	57 bp upstream
Tssr108009	transcription start site region 108009	41 bp upstream
Tssr108010	transcription start site region 108010	369 bp downstream
Tssr108011	transcription start site region 108011	965 bp downstream
Tssr108012	transcription start site region 108012	999 bp downstream
Tssr108013	transcription start site region 108013	1093 bp downstream
Tssr108014	transcription start site region 108014	1100 bp downstream
Tssr108015	transcription start site region 108015	1183 bp downstream
Tssr108016	transcription start site region 108016	1235 bp downstream
Tssr108017	transcription start site region 108017	1286 bp downstream
Tssr108018	transcription start site region 108018	1301 bp downstream
Tssr108019	transcription start site region 108019	1337 bp downstream
Tssr108020	transcription start site region 108020	1393 bp downstream
Tssr108021	transcription start site region 108021	1413 bp downstream
Tssr108022	transcription start site region 108022	1424 bp downstream
Tssr108023	transcription start site region 108023	1677 bp downstream