rs37127139 SNP Detail

Summary

• ID
  rs37127139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:24527506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCAGTTG TCTGTGCAGA
  GACAAAACAG GACCGTGATG TTTACCGTAA TCCCCTGGTT AGCCGACCCT CCCGACACAA
  CTACGCACCC TGTCGCCCCC TGCCAGGACA GCGGAACACT CCCCCAACCC CTCCTCTTAG
  CGTCTCTGCC CACCGATGAG GGAGACGCGG CTGCCTACGG TCCCCATTCG CAGCATCACG
  R
  TGACCTCCAC ACGCTCACCT TTTTCAGCAA GCCCGCCATG ACAGCGTCCA GCGCCTCCAG
  CGCACAGCCC TCTGGGAACC TTTCCCAAGC CCGCTCAATC GAGCGTCGAT GCTGCCCCTG
  AGTCACCTAA GAACACTCTT GGCTCCAACC GCTCGGGCTG GGTAGGGGCA GCTCCCGCCC
  ACCTAGGAGA GGTAGATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51254281	NES13800959	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37127139					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51254281	NES13800959	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24527506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Asb15	ankyrin repeat and SOCS box-containing 15			637 bp upstream
Cpgi17202	CpG island 17202			within coordinates
Ndufa5	NADH:ubiquinone oxidoreductase subunit A5			Intron
				Noncoding-Transcript-Variant
Rr399585	regulatory region 399585			within coordinates
Rr627233	regulatory region 627233			within coordinates
Rr627234	regulatory region 627234			53 bp proximal
Rr627235	regulatory region 627235			648 bp proximal
Tssr55166	transcription start site region 55166			679 bp upstream
Tssr55167	transcription start site region 55167			704 bp upstream
Tssr59987	transcription start site region 59987			39 bp downstream
Tssr59988	transcription start site region 59988			518 bp downstream