rs37127618 SNP Detail

Summary

• ID
  rs37127618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6215071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTTCTTT CCTCGCTGAC
  TCTGTCTTTC TCCAGCCTCT ATTCTGGTCT GAAGTTTGCC CTGAGGAGGA TATAGCCACA
  ATCCAAGGGA CATGCAGAGT CCTCAGCCAG AGTGGCTGGA GTCTTGCCTG AGGTGGAGTG
  ACAGAGACAG GGTCCCGCTC TAGGCATTTG ACTTCAAGTT CCATTTAAGT TTTGTGGTCC
  Y
  CGGGGTTGGA GGGCTCAGAG CTCTCAGGAG CAGTCCTCTC TGCCCAATGG AATCTCCATC
  AGTTCTAGGC AGCCGCCCCA CTGCCCTGTG AGTGAGCATG GAGTCTTGTA GATCTCTTCT
  GTGCCAGGTA GGTGACATTC CTGCTTTGAG GAAAGATCTC GTGTATCCCA GGCTGGCTTC
  AAACTCACTA TGTAGCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss50575242	NES13648786	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs37127618					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575242	NES13648786	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6215071 () rs orientation: forward

Symbol	Name	Function Class
Batf2	basic leucine zipper transcription factor, ATF-like 2	within coordinates
Rr359359	regulatory region 359359	1730 bp proximal
Rr363687	regulatory region 363687	70 bp distal
Tssr154583	transcription start site region 154583	595 bp downstream
Tssr154584	transcription start site region 154584	580 bp downstream
Tssr154585	transcription start site region 154585	530 bp downstream
Tssr154586	transcription start site region 154586	697 bp upstream
Tssr154587	transcription start site region 154587	725 bp upstream