rs37128299 SNP Detail

Summary

• ID
  rs37128299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69838194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTATGC TAGGCGCCGA
  GGTGCTTGTG TGCTGGCGGC AGGGCTACAG CAGAGAAAAC GCACGATGTG AAACCTGGCC
  AACCCGGGGC AAGGAACGTG CGATGCAAAT GTACACAGAG CTCAAGAGGA AGCTGGGTCT
  GGGCATACCG AGCGTGACGG CTGCCTGGCA AAGGGTAGAG GTATAATGAG TTACTAGAAT
  R
  GACTCGTGGT GGTCTGGGAC CCTCCCCAGA AATCATGTGC AAATGTGAAT GCCTACTCTT
  TTTGACTTTT GTCTTCTCGA TAGCTTTGCC TTGCCCAGAA TATCGCGTAC ATGGAAACAT
  ACAGTGCACA GCTTTTATTG AGTCAGATTC TCACTTCACA GAATACATCT GAGAGCCACA
  CACATCTTGC ATTTAGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51016663	NES14398527	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	A		A
ss324085702	CHEV_12_70892407	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37128299					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51016663	NES14398527	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69838194 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	153 bp upstream
Cpgi4702	CpG island 4702	20 bp distal
Rr257091	regulatory region 257091	407 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	1147 bp upstream
Tssr116528	transcription start site region 116528	1144 bp upstream
Tssr116529	transcription start site region 116529	1122 bp upstream
Tssr116530	transcription start site region 116530	789 bp upstream
Tssr116531	transcription start site region 116531	685 bp upstream
Tssr116532	transcription start site region 116532	127 bp upstream
Tssr116533	transcription start site region 116533	125 bp upstream
Tssr116534	transcription start site region 116534	97 bp upstream
Tssr116535	transcription start site region 116535	82 bp upstream
Tssr116536	transcription start site region 116536	56 bp upstream