rs37129663 SNP Detail

Summary

• ID
  rs37129663
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47448171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG CAGAGGCATG AAGGGGTTTG
  M
  TACCGATTCC TAAACGCACC ACTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50859974	NES13511596	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	C	A	A	C	C		A	C	C	A		C
ss146465810	ENSMUSSNP573682	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						A
ss325826226	CHEV_19_47534222	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37129663					SNP	A	C	A	A	A	A	C	A	A	C	C	A	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50859974	NES13511596	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47448171 () rs orientation: forward

Symbol	Name	Function Class
Gm52384	predicted gene, 52384	9 bp downstream
Rr549060	regulatory region 549060	496 bp distal
Rr549061	regulatory region 549061	457 bp proximal
Rr549062	regulatory region 549062	1101 bp proximal
Rr549063	regulatory region 549063	1709 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	876 bp downstream
Tssr159730	transcription start site region 159730	1026 bp downstream