rs37129948 SNP Detail

Summary

• ID
  rs37129948
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90919478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTACTTCCC GTCCACTCTG TAGCTTTGCG GATGAGTTTG
  CTCCACCCTC CACCAAAAAT CGCACTCTTA AAATGTCTGC AGCCTAATAA AAAAAAGTTC
  S
  TTGTTGCTGA GCGATAAATG CTAATGAGAC TTTCTCCTAT TTAGAGCTGT GTGCCTACAT
  TAAAACTATA GTCCTTTTTT AAAGATTTAT TCTTGTTTAT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50888623	NES14226533	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37129948					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50888623	NES14226533	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90919478 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	846 bp upstream
Cpgi2099	CpG island 2099	80 bp distal
Ikbip	IKBKB interacting protein	within coordinates
Rr402144	regulatory region 402144	462 bp downstream
Rr436976	regulatory region 436976	1198 bp distal
Rr436977	regulatory region 436977	549 bp distal
Tssr95222	transcription start site region 95222	1513 bp downstream
Tssr95223	transcription start site region 95223	588 bp downstream
Tssr95224	transcription start site region 95224	541 bp downstream
Tssr95225	transcription start site region 95225	513 bp downstream
Tssr98900	transcription start site region 98900	1039 bp upstream
Tssr98901	transcription start site region 98901	955 bp upstream
Tssr98902	transcription start site region 98902	916 bp upstream
Tssr98903	transcription start site region 98903	843 bp upstream
Tssr98904	transcription start site region 98904	809 bp upstream