rs3713006 SNP Detail

Summary

• ID
  rs3713006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48822364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGGCTA CTTGGGATCT
  AGCCCACAGC AGGAGTGCAA TTAGGATCAT AGTGGATGGT GTCACTCAGC CCTAGCATCT
  TTCTCAAGTC ACCAGGACTC CTCATCCAGT TGGTTTGGGA CATGCCCGGG CATGTAGTGC
  CCTTGCGAGT GTGATTTTCC TGCTCCATGC TGCCCGCCCC TATGCTATCC TGCTCCTCAT
  Y
  TACTTGGCGA GTGTTTTGTT TCTTTTGCAT TGTGACAGTG AATTGGATTT CCCCATTCCG
  GTTACGATGC TGATACTACT AACTAGAATG TTGATTTATG TGCCTCCCAC TTGAGTATGA
  ATATTTTGCT TCTATTTATG TGCTTGCAAT TTTAGAGTGA CTAGATTCTG CCTTGTTAAC
  CACTCCAATA TGCTGAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5089256	WI_WGS_4_47683651	WI	MOUSE	f	SNP	T			C
ss146280805	ENSMUSSNP6558030	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3713006					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48822364 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	within coordinates