rs37130300 SNP Detail

Summary

• ID
  rs37130300
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123155593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGATGGG CATGGGTGCA
  TCCACACTGT CTGTCCTGGG AATCTTGTTT GCACAGCCTG GGTAGAGTAG GCTCCTCAAC
  TCCAGGATGC CATCCTTTAA ATTGTGCAGA CTTACGAAGG GTTGAGGTCC AGGACTGCCT
  CCCTTCTGAG CCACAGTTTC AACTAAGCAC TCTGCTATGA AGCTGGACTT CTAAGAACTC
  W
  GGATTCATTG TCTGAGGTCT CCTGATGCTC TGCCCCCACT GCCGACACCC AGCCCCTTGA
  GTGAGCCTCA AGAGAGGAAG GGGGTGCCTG GCCACCCTCA TGCCATGGTA ACGGAGTGAC
  AAGTTTCCTG GATTACTCTT CTCTTGGCTT GTGAGTCAGC ACAGCCAACT TCCTGCCCCC
  AGAGGGCTTC CTTCCTACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51195018	NES13812738	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs37130300					SNP	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195018	NES13812738	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123155593 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16567	CpG island 16567	1630 bp distal
Orai1	ORAI calcium release-activated calcium modulator 1	within coordinates
Rr620049	regulatory region 620049	69 bp proximal
Rr620050	regulatory region 620050	1826 bp proximal
Tssr48747	transcription start site region 48747	1290 bp downstream
Tssr53184	transcription start site region 53184	1620 bp upstream
Tssr53185	transcription start site region 53185	1573 bp upstream
Tssr53186	transcription start site region 53186	1550 bp upstream
Tssr53187	transcription start site region 53187	27 bp downstream
Tssr53188	transcription start site region 53188	1414 bp downstream
Tssr53189	transcription start site region 53189	1440 bp downstream