rs37130539 SNP Detail

Summary

• ID
  rs37130539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68940806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCCAAG CTCTGTCCCA
  AAACTGAATG GACTTTAGTT CTACCATGAA TTAAACCAGT AATGAGTACT TTCATCTCTG
  ATTCAGACAT TATCTACTAG ATTTGATAGC TACTGACCAC TCAAGACTCC TTTGCTTAGG
  ATGAAATACT TACACTCTCT GGACCTCAGG ATTCTCTTTG ATCCATTGTT CATCACAATA
  R
  CTCCATATAG TGAGGTCTGT ATGGCTCGCG TGCTAAGGAC TTCACATGAG GGAACTCCTA
  TGTCTACAGC AAACTTAATG CAGATGGCCT GAAACTTAGG TTAAGGGACT TAACTAAAGT
  CAAAGAGCAT TGACTAATTC CAGAGCAGAG AATTAAAGCA CGTCTTTGCA CCAGTGTAGT
  TTGGGCTCTA TGCCACTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50730524	NES14249541	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37130539					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50730524	NES14249541	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68940806 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682107	regulatory region 682107	600 bp proximal
Tssr90367	transcription start site region 90367	763 bp downstream
Tssr90368	transcription start site region 90368	816 bp downstream
Tssr90369	transcription start site region 90369	930 bp downstream