rs37130576 SNP Detail

Summary

• ID
  rs37130576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44056428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGTGAC TCAACAACTG
  CTACTTCAAA CATCCATCAC ATTTAAAAGT GTGAAAATGC ATCCAAGTCC ACTGCCAATA
  TTGCACCCTG TTTCATAAGC TCCACCAACC ACACCTCTGC GTCTCTAGCA CTGCTCTTGG
  GTTCAAAAGA TCCTCTCTGG TCTTTAGTTT GCCGATAAAT ACTTATGGAA AAAATTCTAA
  Y
  GACTCTCAAT TAATGACACA TAACAAGAGA CAAATCAAAA CAATACATTT AATCGCTAAG
  TTTAAAAAAG GAAAAAACCA AACTTTCAAG GAAGAAGAAA CTTTCTGAGG CTAATGGTTC
  TTTCAATACA TGAGTCCAAT CCTAGGGGGA TGGTTTCTGT CTAAAGGTAA CAAAAACCTA
  GCATGGAAAG ACAGACAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss50804564	NES13529647	PERLEGEN	MM_PANEL2	f	SNP	T	C		C	C		C
ss325817150	CHEV_19_44142479	CHEVERUD	SCREENING_POP	f	SNP			C			C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs37130576					SNP	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50804564	NES13529647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44056428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	1038 bp proximal
Erlin1	ER lipid raft associated 1	within coordinates
Gm59010	predicted gene, 59010	1871 bp upstream
Rr548150	regulatory region 548150	1527 bp proximal
Rr548151	regulatory region 548151	1882 bp proximal
Tssr159429	transcription start site region 159429	1371 bp downstream
Tssr159430	transcription start site region 159430	1657 bp downstream
Tssr159431	transcription start site region 159431	1701 bp downstream
Tssr159432	transcription start site region 159432	1747 bp downstream