rs37130904 SNP Detail

Summary

• ID
  rs37130904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66592124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTGAGGT CATACTCGGG
  ACGGTTCAGC CCTTCGGGGC TCGGGCTAGA ATGTACGCGC CTGCATGTTC GGGCCAAATC
  GGCTCCCGGG CTCGTGACTT CGACTGGTCT AGAAAGTTCT TCAGGGCTTC TACCGAGACT
  GTGGGCCTCT GGGAGAGTCC AGTCCAGCGT ATCATTGGGA TGCAGGTGCA TCTTAGGCCT
  R
  ATTCTCGTCT GATTCGTGGG TCTCTGATTG CTCTACCAGG GACCGGGAGG AGAGAAAAAT
  ATACAGGTGC AGGCGGTGGC CTAGAAGATG GTTTTTAGCG GCAGGTGGGG GTGGGAGAGG
  CCTCTCGGCC TAGCGCTTCC CTGACAGGCC CTCTTCCTCC CCAGGCCATC TTTGAGAGCC
  CCCTTCATCT CGATCCCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50450322	NES13440898	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37130904					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450322	NES13440898	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66592124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	within coordinates
Cpgi10161	CpG island 10161	1801 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	within coordinates
Rr405709	regulatory region 405709	333 bp downstream
Rr539737	regulatory region 539737	450 bp distal
Rr539738	regulatory region 539738	641 bp distal
Rr539739	regulatory region 539739	587 bp distal
Rr539740	regulatory region 539740	within coordinates
Tssr151705	transcription start site region 151705	449 bp downstream