rs3713181 SNP Detail

Summary

• ID
  rs3713181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70119087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCAGGTGG AAACTTCAGT
  GGAGAGTAAA CAAGAAATAC ACGTCCGGTC CAAAGAGGAA CGGCCATGGT TATTACACTG
  ACCATATTAC CAGGTTCTCT TGTAGACGCG CATGCAGTCT AGAGCCTGTG CTGGACTGCT
  CATTTTTATG TATCCTGATG TCTCTGACAG GCCAAGCACG CTCATCTGTG GCTCATCTGC
  Y
  CGGAGCCACT ATGAGCTCAG TATGTGTCCG TGAACCACAA TACTTCCTCC CTCTACTTGC
  TAGCCACAGG GTTTAAACAG CAGCTGCGTA CTCAGTAATG ATGTCAGTGT TCATTGCTAC
  ATCTACGTCT TCTCCTACGG CCTTGCCAGG GAAGGCGGTT GCCGGGTATT TTGTACCTGT
  GGAATTTGGC AGCTTAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5089431	WI_WGS_9_70826317	WI	MOUSE	f	SNP	T			C
ss136604738	ENSMUSSNP1471728	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3713181					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70119087 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	36 bp upstream
Myo1e	myosin IE	within coordinates
Rr206678	regulatory region 206678	1886 bp distal
Tssr85881	transcription start site region 85881	1406 bp upstream
Tssr90403	transcription start site region 90403	61 bp upstream