rs37132766 SNP Detail

Summary

• ID
  rs37132766
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97874848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGCTGTT CTTACAGTGG
  TAGGTGATGT TCTGGGAGCC CTCAGTGGAC AGTAGACGGA GGAAAGTCAT CTGGACGTTA
  GCGGTGTTGG GAGCCAGGTT GCCATCGCCA TAGCTGAACT GTGGGGCAGA GGGGCGAGGG
  TTGTGAGACC AGGGGCCTAG CATCTGCTGG GATCAGAGGC TAACAGTACA TTCATCTGAT
  R
  GGGGCTCAGA GCATCAGATG GGCCCTGGGG CAGGTGTGGA GCAAGCTCAG AGGACATCTT
  CTCTCGCTCT AATGGGGAAA ATACTTTCTC CTCTTTCTTT CTTCTAAGGC CCAAAGGGAC
  ACCGGCGGAG GATGCCAAGA AGGAGCTAAA GAATCGGAGG AGAGAGAAGA GCACTCAGGA
  GGGACCAGCT GAGCCTAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763545	NES14551342	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37132766					SNP	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763545	NES14551342	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97874848 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col2a1	collagen, type II, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr509000	regulatory region 509000			135 bp distal
Tssr4707	transcription start site region 4707			72 bp upstream
Tssr132910	transcription start site region 132910			1337 bp downstream
Tssr136189	transcription start site region 136189			1280 bp upstream
Tssr136190	transcription start site region 136190			1250 bp upstream
Tssr136191	transcription start site region 136191			1046 bp upstream
Tssr136192	transcription start site region 136192			916 bp upstream
Tssr136193	transcription start site region 136193			899 bp upstream
Tssr136194	transcription start site region 136194			848 bp upstream
Tssr136195	transcription start site region 136195			825 bp upstream
Tssr136196	transcription start site region 136196			813 bp upstream
Tssr136197	transcription start site region 136197			795 bp upstream
Tssr136198	transcription start site region 136198			271 bp upstream
Tssr136199	transcription start site region 136199			232 bp upstream
Tssr136200	transcription start site region 136200			207 bp upstream
Tssr136201	transcription start site region 136201			151 bp upstream
Tssr136202	transcription start site region 136202			89 bp upstream
Tssr136203	transcription start site region 136203			310 bp downstream
Tssr136204	transcription start site region 136204			403 bp downstream
Tssr136205	transcription start site region 136205			866 bp downstream
Tssr136206	transcription start site region 136206			905 bp downstream
Tssr136207	transcription start site region 136207			935 bp downstream