rs37134142 SNP Detail

Summary

• ID
  rs37134142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11797347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGC GGTAATCAAC TCTAATCCTC
  Y
  ATCTGACCTC CGGCTCCTGT CCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss50615994	NES13627380	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs37134142					SNP	T	C	T	C	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50615994	NES13627380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11797347 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10634	CpG island 10634			587 bp distal
Cpgi10635	CpG island 10635			within coordinates
Gm41810	predicted gene, 41810			within coordinates
Gm59062	predicted gene, 59062			within coordinates
Rr544382	regulatory region 544382			1749 bp distal
Rr544383	regulatory region 544383			1273 bp distal
Rr544384	regulatory region 544384			551 bp distal
Rr544385	regulatory region 544385			54 bp proximal
Rr544386	regulatory region 544386			450 bp proximal
Rr544387	regulatory region 544387			472 bp proximal
Stx3	syntaxin 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr155283	transcription start site region 155283			1879 bp downstream
Tssr155284	transcription start site region 155284			1868 bp downstream
Tssr155285	transcription start site region 155285			1407 bp downstream
Tssr155286	transcription start site region 155286			941 bp downstream
Tssr155287	transcription start site region 155287			1498 bp upstream
Tssr155288	transcription start site region 155288			1839 bp upstream
Tssr158398	transcription start site region 158398			1541 bp upstream
Tssr158399	transcription start site region 158399			1100 bp upstream
Tssr158400	transcription start site region 158400			1018 bp upstream