rs3713471 SNP Detail

Summary

• ID
  rs3713471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26838165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGG GAGTCTGCTC TGGTCTGGCT
  Y
  GAAGCCATCC TTTCATCTAG AGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss5089722	WI_WGS_14_22220635	WI	MOUSE	f	SNP	T			C
ss39290771	mCV22747364	ABI	CRAMUS_MOUSE	f	SNP		T	T	C
ss139210900	ENSMUSSNP5375514	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss324569426	CHEV_14_27929394	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3713471					SNP	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26838165 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	within coordinates
Cpgi6253	CpG island 6253	749 bp distal
Rr296929	regulatory region 296929	within coordinates
Tssr124726	transcription start site region 124726	1314 bp downstream
Tssr124727	transcription start site region 124727	1299 bp downstream
Tssr124728	transcription start site region 124728	1007 bp downstream