rs37135537 SNP Detail

Summary

• ID
  rs37135537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43057858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGGGCCAA ATGCTCCATA AAACATGGAG TAGGCAGGTG
  GGTATGGGGG AGAAGGGAGT GGAGGGAAAG GGAGATGCAA TGGGCTCGAA ACTTGCAGTT
  Y
  GTCTTGCACC GGTACCCAGG GCTCAGCTTC CGCCTACATT TCCCCTCCTC TCTCACTCCA
  ATCAAACACA GACCAGCTGA GAAGGAGGCC AACTTGTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51478350	NES13970895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37135537					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478350	NES13970895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43057858 () rs orientation: forward

Symbol	Name	Function Class
Rr645953	regulatory region 645953	220 bp distal
Rr645954	regulatory region 645954	within coordinates
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65984	transcription start site region 65984	223 bp downstream
Tssr65985	transcription start site region 65985	214 bp downstream
Tssr65986	transcription start site region 65986	178 bp downstream
Tssr65987	transcription start site region 65987	161 bp downstream
Tssr65988	transcription start site region 65988	149 bp downstream
Tssr65989	transcription start site region 65989	48 bp upstream
Tssr65990	transcription start site region 65990	85 bp upstream
Tssr65991	transcription start site region 65991	818 bp upstream
Tssr65992	transcription start site region 65992	829 bp upstream
Tssr65993	transcription start site region 65993	862 bp upstream
Tssr65994	transcription start site region 65994	975 bp upstream