rs37137342 SNP Detail

Summary

• ID
  rs37137342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:10983497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGAAGG AACTGAGGGG
  TGCTGCGAGG AGGACCTGGA GCCAGGTCTA TTTTGATATG TGATATATGC ACCTCAGTCC
  TTGTCCCAGG AGCAAACAAA AACAACAACC ACAAAACAAT TGATTGCTTT CCTCTAAAGG
  TGTCATGGAG AAACTCCAGC TTGGGCCAGA GACTCTACTG CAGGACAATC CAAAGCTCAT
  Y
  TATGCCAGGC TGAGCGGATT TGGCCAATCG GGAATTTTCT CCAAAGTAGC TGGCCATGAC
  ATCAACTATT TGGCTTTATC AGGTAGGTTT GAAAGGCTTT TCTAAAATAA TTTGAACTGG
  CTCCAAAATC AGGAAGTACA GTTACATTGC TTAACAAGGG TTTTTTAAAC ATTTAATTAT
  TTTTCATTAT GTGTGTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51577105	NES14605678	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37137342					SNP	T	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577105	NES14605678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10983497 () rs orientation: forward

Symbol	Name	Function Class
Amacr	alpha-methylacyl-CoA racemase	within coordinates
Cpgi6946	CpG island 6946	1265 bp distal
Gm34315	predicted gene, 34315	1778 bp upstream
Rr311562	regulatory region 311562	96 bp distal
Tssr130700	transcription start site region 130700	1646 bp downstream
Tssr130701	transcription start site region 130701	1606 bp downstream