rs37138399 SNP Detail

Summary

• ID
  rs37138399
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88864547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA GAGAAGATCG TGACTCTTGA
  W
  AGGCCCGTTG GCTGAGAGCT CCGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51740304	NES14559941	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37138399					SNP	T	T	T	T	T	T	A	T	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740304	NES14559941	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88864547 () rs orientation: forward

Symbol	Name	Function Class
Gm8702	predicted gene 8702	within coordinates
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	1355 bp upstream
Rr507763	regulatory region 507763	1348 bp distal
Rr507764	regulatory region 507764	847 bp distal
Tssr135828	transcription start site region 135828	1780 bp upstream
Tssr135829	transcription start site region 135829	1747 bp upstream
Tssr135830	transcription start site region 135830	1535 bp upstream
Tssr135831	transcription start site region 135831	1352 bp upstream
Tssr135832	transcription start site region 135832	80 bp downstream