rs3713899 SNP Detail

Summary

• ID
  rs3713899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70119203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTAGAGCC TGTGCTGGAC
  TGCTCATTTT TATGTATCCT GATGTCTCTG ACAGGCCAAG CACGCTCATC TGTGGCTCAT
  CTGCCCGGAG CCACTATGAG CTCAGTATGT GTCCGTGAAC CACAATACTT CCTCCCTCTA
  CTTGCTAGCC ACAGGGTTTA AACAGCAGCT GCGTACTCAG TAATGATGTC AGTGTTCATT
  R
  CTACATCTAC GTCTTCTCCT ACGGCCTTGC CAGGGAAGGC GGTTGCCGGG TATTTTGTAC
  CTGTGGAATT TGGCAGCTTA AGCAAGGGAA GGCTTCTGTA CAGCTGCGCT AATTGGAGCT
  GTGTGAACCT GAGTGAAGAT GGCTCGCGAG TGGCTAGGCC ACGCCTTCAG CTTCCCTTGT
  TACCCCTTCA TCCCCTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5090152	WI_WGS_9_70826433	WI	MOUSE	f	SNP	A			G
ss136604741	ENSMUSSNP1749191	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3713899					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70119203 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	152 bp upstream
Myo1e	myosin IE	within coordinates
Tssr85881	transcription start site region 85881	1290 bp upstream
Tssr90403	transcription start site region 90403	177 bp upstream