rs37139620 SNP Detail

Summary

• ID
  rs37139620
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93731340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTCTGAG ATAAAATATG
  CAGAACACAG CACAGAAAGA AGCAATGAAG TTGAGAGAGC CTGATCTAAT GACTCCATCA
  GCCGCCAGCT TGAGGAACCC CAGAATCTAC CAGCAAACGT GCAATATAGT GCATCTCTGC
  ATCATTAAAT ACAGAAGGTA AGTTCTCTCA ACAGTTCGAC ACTCTAACAC AGTGGTTCTC
  M
  ACCTGGGGTC GCCTAAGACC TTCGGAAGTA CAGGTATTTA CATTATGATT CCTAACACTA
  GCAAAATTAA GTAGCAACAA AAATAACTTT ATGGTTAGGG TCACTACAAA ATGAAGTGCT
  GCATTGAGAA GGCTGAGAAC CACTGCAGCA CTCAGTGCTC AGGCGTAACT TTCTGTTTTT
  AGAAATGTTT CTAGATCATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50904642	NES14161110	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37139620					SNP	C	C	A	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904642	NES14161110	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93731340 () rs orientation: forward

Symbol	Name	Function Class
4930471D02Rik	RIKEN cDNA 4930471D02 gene	1671 bp upstream
Metap2	methionine aminopeptidase 2	within coordinates
Rr437346	regulatory region 437346	1412 bp proximal
Rr437347	regulatory region 437347	1946 bp proximal
Tssr95291	transcription start site region 95291	1678 bp upstream
Tssr95292	transcription start site region 95292	1686 bp upstream