rs3713982 SNP Detail

Summary

• ID
  rs3713982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70119251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGGCCA AGCACGCTCA
  TCTGTGGCTC ATCTGCCCGG AGCCACTATG AGCTCAGTAT GTGTCCGTGA ACCACAATAC
  TTCCTCCCTC TACTTGCTAG CCACAGGGTT TAAACAGCAG CTGCGTACTC AGTAATGATG
  TCAGTGTTCA TTGCTACATC TACGTCTTCT CCTACGGCCT TGCCAGGGAA GGCGGTTGCC
  R
  GGTATTTTGT ACCTGTGGAA TTTGGCAGCT TAAGCAAGGG AAGGCTTCTG TACAGCTGCG
  CTAATTGGAG CTGTGTGAAC CTGAGTGAAG ATGGCTCGCG AGTGGCTAGG CCACGCCTTC
  AGCTTCCCTT GTTACCCCTT CATCCCCTGT TTCAGTGAAA TGCTCCGGGA CCCAAGGTTC
  CGCAGTGCAG GAACTCAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5090235	WI_WGS_9_70826481	WI	MOUSE	f	SNP	A						G
ss52028008	NES15045336	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	A	G		G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3713982					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52028008	NES15045336	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70119251 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	200 bp upstream
Myo1e	myosin IE	within coordinates
Tssr85881	transcription start site region 85881	1242 bp upstream
Tssr90403	transcription start site region 90403	225 bp upstream