rs37141111 SNP Detail

Summary

• ID
  rs37141111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38219792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTTTGC TGCTGTGAGT
  TGGTATAGTG GTGAGAACAG TGAAAGCTGT GTGAAGTTAT CATGGGTGAA TATTGCCCGA
  AATTTGTCAG ATTCACCCCA CCGTTTAAAT TATGAATCAA GTTTTGGGTG TGGAGAATTT
  ATCATGACTC TCCCCACCCC ATTATGGGGC CATGATCTTT AGTTAAGAAA CTCTGGTCTA
  Y
  ACAGTTAAAA CACAGGCTGA AAATACCCCC CATTCTAGTG GCATATTATC AGATTGTCTC
  AGTCTATCCT TAGTACCTGT CTGCCTGGAT GACTTTGTTA GATTACTTAT TTACTGAAGA
  CGTTTTCAAA TCGATGTCAT CATTTGGTAA ACTGTAAAAA ACCAAGTAGG CTAAGGAAGC
  TAGGCAGGGC TGCTGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51098407	NES14356933	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37141111					SNP	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51098407	NES14356933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38219792 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	within coordinates
Cpgi5461	CpG island 5461	788 bp proximal
Riok1	RIO kinase 1	1179 bp upstream
Rr281252	regulatory region 281252	208 bp proximal
Rr369679	regulatory region 369679	1530 bp upstream
Tssr119342	transcription start site region 119342	1419 bp upstream
Tssr122123	transcription start site region 122123	1074 bp downstream
Tssr122124	transcription start site region 122124	1109 bp downstream
Tssr122125	transcription start site region 122125	1267 bp downstream
Tssr122126	transcription start site region 122126	1349 bp downstream