rs37142479 SNP Detail

Summary

• ID
  rs37142479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8060920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGAACACA ACATAGAAGC CAGTATAGGA ATGAATGGAG
  ATGCCAACCT GGATTTCTTA AACATACCTT TAACAATTCC TGAAATTAAC TTGCCTTACA
  Y
  GGAGTTCAAA ACTCCCTTAC TGAAGGATTT CTCCATATGG GAAGAAACAG GCTTGAAAGA
  ATTTTTGAAG ACAACAAAGC AATCATTTGA TTTGAGTGTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50958141	NES14429020	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37142479					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958141	NES14429020	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8060920 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112649	transcription start site region 112649	1823 bp downstream
Tssr112650	transcription start site region 112650	1743 bp downstream
Tssr112651	transcription start site region 112651	1691 bp downstream
Tssr112652	transcription start site region 112652	1661 bp downstream
Tssr112653	transcription start site region 112653	1642 bp downstream
Tssr112654	transcription start site region 112654	1628 bp downstream
Tssr112655	transcription start site region 112655	1605 bp downstream
Tssr112656	transcription start site region 112656	1585 bp downstream
Tssr112657	transcription start site region 112657	1571 bp downstream
Tssr112658	transcription start site region 112658	1538 bp downstream
Tssr112659	transcription start site region 112659	1459 bp downstream
Tssr112660	transcription start site region 112660	1335 bp downstream
Tssr112661	transcription start site region 112661	1100 bp downstream
Tssr112662	transcription start site region 112662	859 bp downstream
Tssr112663	transcription start site region 112663	618 bp downstream
Tssr112664	transcription start site region 112664	594 bp downstream
Tssr112665	transcription start site region 112665	439 bp downstream
Tssr112666	transcription start site region 112666	419 bp downstream
Tssr112667	transcription start site region 112667	370 bp downstream
Tssr112668	transcription start site region 112668	234 bp downstream
Tssr112669	transcription start site region 112669	147 bp downstream
Tssr112670	transcription start site region 112670	91 bp downstream
Tssr112671	transcription start site region 112671	3 bp upstream
Tssr112672	transcription start site region 112672	582 bp upstream
Tssr112673	transcription start site region 112673	625 bp upstream
Tssr112674	transcription start site region 112674	726 bp upstream
Tssr112675	transcription start site region 112675	753 bp upstream
Tssr112676	transcription start site region 112676	856 bp upstream
Tssr112677	transcription start site region 112677	1006 bp upstream
Tssr112678	transcription start site region 112678	1130 bp upstream
Tssr112679	transcription start site region 112679	1155 bp upstream
Tssr112680	transcription start site region 112680	1174 bp upstream
Tssr112681	transcription start site region 112681	1221 bp upstream
Tssr112682	transcription start site region 112682	1234 bp upstream
Tssr112683	transcription start site region 112683	1271 bp upstream
Tssr112684	transcription start site region 112684	1315 bp upstream
Tssr112685	transcription start site region 112685	1363 bp upstream
Tssr112686	transcription start site region 112686	1411 bp upstream
Tssr112687	transcription start site region 112687	1491 bp upstream
Tssr112688	transcription start site region 112688	1592 bp upstream
Tssr112689	transcription start site region 112689	1634 bp upstream
Tssr112690	transcription start site region 112690	1659 bp upstream
Tssr112691	transcription start site region 112691	1710 bp upstream
Tssr112692	transcription start site region 112692	1746 bp upstream
Tssr112693	transcription start site region 112693	1765 bp upstream
Tssr112694	transcription start site region 112694	1903 bp upstream