rs37143036 SNP Detail

Summary

• ID
  rs37143036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72533054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT AGGAGGCCAC TCAGCCCGGT
  Y
  TTTTGGGTTG CAGGAAGGTG GTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51696150	NES14820980	PERLEGEN	MM_PANEL2	f	SNP		C	T		C		C	C	T	C		T
ss133285547	ENSMUSSNP349156	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			C
ss321822093	CHEV_6_72506065	CHEVERUD	SCREENING_POP	f	SNP						C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37143036					SNP	T	C	T	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51696150	NES14820980	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72533054 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	268 bp downstream
Tssr57143	transcription start site region 57143	242 bp downstream
Tssr57144	transcription start site region 57144	9 bp upstream
Tssr57145	transcription start site region 57145	75 bp upstream
Tssr57146	transcription start site region 57146	90 bp upstream
Tssr57147	transcription start site region 57147	1263 bp upstream
Tssr61469	transcription start site region 61469	1718 bp downstream