rs37143338 SNP Detail

Summary

• ID
  rs37143338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132285493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC ACACCTTCTA ACTGCACCAC
  Y
  TGCTGCTGCT GCTGCTGCAG TTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373312	NES14476216	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T	C	C	T	C	T	C	C	C
ss145484903	ENSMUSSNP1100001	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37143338					SNP	C	C	T	C	T	C	T	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373312	NES14476216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132285493 () rs orientation: forward

Symbol	Name	Function Class
Rr12284	regulatory region 12284	1493 bp distal
Tmcc2	transmembrane and coiled-coil domains 2	within coordinates
Tssr13633	transcription start site region 13633	253 bp upstream
Tssr13634	transcription start site region 13634	200 bp upstream
Tssr13635	transcription start site region 13635	95 bp upstream
Tssr13636	transcription start site region 13636	488 bp downstream
Tssr13637	transcription start site region 13637	1145 bp downstream