rs37143497 SNP Detail

Summary

• ID
  rs37143497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109677959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCATCAG CAATGACCTC
  ACGGTACCTG AAGAGGGATC AAGCAAACTG CATGTGTATT ATTAACACCA TTTGTAACCT
  GGCCTACTCT TTTCAATATC AACTTCAGCT TTGAAGGTTT CCAAAGAGGC CCCATTAACC
  TTGGGGGTGG GGGGGCAAGG CAGAAGGACA AATGCCTTGG GGTAGAGGTT GTCCATGCTT
  Y
  TTGCTTTACT TACAGCGCAT GTTAATTTGG TCCACCTTCC CATAATAGTG AATGCGCCTT
  GGGGGCTTCC TGTGAACAAT ATTTCCTTAA AGGCACAGTG CTAGTTACGG GGTCTTCTCT
  TCGCGTCCTT GCAAACTTCT CTTTGCTATA TTCTCTGCAT CTGCAGCAGG CAATGCATGG
  TGGTCTCTTT TCAACATTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51053027	NES14374809	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37143497					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51053027	NES14374809	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109677959 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	within coordinates
Gm54365	predicted gene, 54365	254 bp downstream
Mir299a	microRNA 299a	825 bp downstream
Mir299b	microRNA 299b	832 bp upstream
Mir323	microRNA 323	983 bp upstream
Mir329	microRNA 329	1956 bp upstream
Mir380	microRNA 380	278 bp upstream
Mir411	microRNA 411	1269 bp downstream
Mir758	microRNA 758	1285 bp upstream
Mir1197	microRNA 1197	792 bp upstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc44	microRNA cluster 44, including Mir1197 through Mir758	792 bp proximal
Rr262534	regulatory region 262534	440 bp proximal
Tssr115175	transcription start site region 115175	1915 bp downstream