TCCTTCTTGT GGACCTGGAC GTCCAGTGAG TTCAATAAAC GATTCTTGCT TAATTGAGAT TGGTATTCGT ATAATTTGAG TGGCAATTCC CAGACCCCAA CAATAATAAC AAGATGTCAC TTTATGCCCC AATATTAGTG GAATTAAATT CAAGGCAACA TCACTTACAC ACTGAGCAGA AGTGTGACGC TGTGCAATGG R CCATTCAAAA GGACAGGTCT ATCCCACCTC AGAGCAGAGA GGGGGTGCTT TGACCATTAG AAAAGAAAAG AGCTGTTAAA AGCCTAAAAG ATGAGTTAGA TGCATTAAGA AACATAGGCA AGGGATAGGA ACCCCCCCAG AAAGCCCAAC AGAGTCAACT AACCTAGACC CTCGGGAACA CTCAGAGACT GAGCTACCAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50582074 | NES13646518 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | G | A | A | G | A |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs37143846 | SNP | A | A | A | A | A | A | A | A | G | A | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50582074 | NES13646518 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr19:4880116 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ccs | copper chaperone for superoxide dismutase | within coordinates | ||||||
Gm59022 | predicted gene, 59022 | 144 bp downstream | ||||||
Rr542851 | regulatory region 542851 | 568 bp distal | ||||||
Tssr157516 | transcription start site region 157516 | 1446 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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