rs37144090 SNP Detail

Summary

• ID
  rs37144090
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5898003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATGGAGG GCAAAGAGCA
  AAATGGGGTT CTCTTTGTGA TGTCCGATTA AAGGGGGAGC ACGCTCCAAT TTCTTTCTCA
  GGGACCTGGC AGCCCCCCAC TGGCCTCATC TTCTTTGGAA GTCAGCTCAG CCCTGTTGTT
  TCCAGACCCA GGCAGACTCA GAATTTCCTA CAAAATCTCT TGGAATAGAG AGAAGGGACG
  M
  AGTGCCCTAA AGGCAGGGCC ATGCCAGTAT TGCTACCACA AGAGAATATT CTGGAACTCC
  AGCCCCCATC CTCCATGGAT CCAGTTTCTA GGCTGTAGTG TTTTTAGGTT CCCTTGTGCT
  TCTCCTGGTG CCAGAGGCCC CTCTGCCCGG GCTCCTTCAC ACTGAGCCCT GAGACATGCG
  GGTCAGGAAA CTGCACAGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss50577076	NES13648176	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs37144090					SNP	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577076	NES13648176	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5898003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10484	CpG island 10484	1934 bp distal
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59609	predicted gene, 59609	within coordinates
Gm59610	predicted gene, 59610	574 bp downstream
Rr370436	regulatory region 370436	within coordinates
Tssr154515	transcription start site region 154515	1191 bp downstream
Tssr154516	transcription start site region 154516	1115 bp downstream
Tssr154517	transcription start site region 154517	1089 bp downstream
Tssr154518	transcription start site region 154518	1065 bp downstream
Tssr154519	transcription start site region 154519	986 bp downstream
Tssr154520	transcription start site region 154520	520 bp upstream
Tssr154521	transcription start site region 154521	614 bp upstream
Tssr157781	transcription start site region 157781	1344 bp upstream
Tssr157782	transcription start site region 157782	1192 bp upstream
Tssr157783	transcription start site region 157783	136 bp downstream
Tssr157784	transcription start site region 157784	1968 bp downstream