rs37145636 SNP Detail

Summary

• ID
  rs37145636
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAAACTC TTGCAGATAC
  CTCACCATGA CATTAAATGA GTCCTAAGGG AAGAGTATGC ATTTCATGTG CAAATCGTTT
  AAACCGAATA GCCTTCATCT ATAAATTAGG AACTGGCTGG ATTGCCCCTC TGTGGAGCTC
  TTTCACTTTA AGCAGCTGTG AGCAGTTGTT ACCTGTATGC AAGCAGAAAG TTGCTTCATC
  K
  GGTTTTGCAT CAAGGCCGGC ACCAGCTCCC TTTCAGGAGC GTCCAGCCTG TTCTCTTCGC
  AGAGCAACCT TTAACCTTTC AGAAACAACT CTGCCTAAAG ATCATGTGAT GTTACCAGTA
  ACTCAAAATG TCCATCTTTT CACAGGCCAG TATTTCCAAA AACTGGGTCG GTGTTCAGCA
  CGGGTTTCTA TAAACACAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658473	NES14824249	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37145636					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658473	NES14824249	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024082 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	698 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	710 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56319	transcription start site region 56319	1831 bp downstream
Tssr56320	transcription start site region 56320	1791 bp downstream
Tssr56321	transcription start site region 56321	1777 bp downstream
Tssr56322	transcription start site region 56322	1759 bp downstream
Tssr56323	transcription start site region 56323	1723 bp downstream
Tssr56324	transcription start site region 56324	1693 bp downstream
Tssr56325	transcription start site region 56325	1537 bp downstream
Tssr56326	transcription start site region 56326	1522 bp downstream
Tssr56327	transcription start site region 56327	1468 bp downstream
Tssr56328	transcription start site region 56328	1390 bp downstream
Tssr56329	transcription start site region 56329	1314 bp downstream
Tssr56330	transcription start site region 56330	1143 bp downstream
Tssr56331	transcription start site region 56331	1098 bp downstream
Tssr56332	transcription start site region 56332	1025 bp downstream
Tssr56333	transcription start site region 56333	987 bp downstream
Tssr56334	transcription start site region 56334	977 bp downstream
Tssr56335	transcription start site region 56335	957 bp downstream
Tssr56336	transcription start site region 56336	930 bp downstream
Tssr56337	transcription start site region 56337	907 bp downstream
Tssr56338	transcription start site region 56338	891 bp downstream
Tssr56339	transcription start site region 56339	877 bp downstream
Tssr56340	transcription start site region 56340	687 bp downstream
Tssr56341	transcription start site region 56341	427 bp downstream
Tssr56342	transcription start site region 56342	395 bp downstream
Tssr56343	transcription start site region 56343	144 bp upstream
Tssr56344	transcription start site region 56344	158 bp upstream
Tssr56345	transcription start site region 56345	176 bp upstream
Tssr56346	transcription start site region 56346	213 bp upstream
Tssr56347	transcription start site region 56347	251 bp upstream
Tssr56348	transcription start site region 56348	277 bp upstream
Tssr56349	transcription start site region 56349	600 bp upstream
Tssr56350	transcription start site region 56350	627 bp upstream
Tssr56351	transcription start site region 56351	657 bp upstream
Tssr56352	transcription start site region 56352	670 bp upstream
Tssr56353	transcription start site region 56353	739 bp upstream
Tssr56354	transcription start site region 56354	754 bp upstream
Tssr56355	transcription start site region 56355	779 bp upstream
Tssr56356	transcription start site region 56356	797 bp upstream
Tssr56357	transcription start site region 56357	809 bp upstream
Tssr56358	transcription start site region 56358	827 bp upstream
Tssr56359	transcription start site region 56359	842 bp upstream
Tssr56360	transcription start site region 56360	879 bp upstream
Tssr60846	transcription start site region 60846	1756 bp upstream
Tssr60847	transcription start site region 60847	1673 bp upstream
Tssr60848	transcription start site region 60848	740 bp upstream
Tssr60849	transcription start site region 60849	181 bp downstream
Tssr60850	transcription start site region 60850	236 bp downstream
Tssr60851	transcription start site region 60851	706 bp downstream
Tssr60852	transcription start site region 60852	749 bp downstream
Tssr60853	transcription start site region 60853	759 bp downstream
Tssr60854	transcription start site region 60854	778 bp downstream
Tssr60855	transcription start site region 60855	811 bp downstream
Tssr60856	transcription start site region 60856	849 bp downstream
Tssr60857	transcription start site region 60857	878 bp downstream